Open-Source Biology And Its Impact on Industry
Technology based on intentional, open-source biology is on its way, whether we like it or not. Distributed biological manufacturing is the future of the global economy and will occur as inexpensive, quality DNA sequencing and synthesis equipment becomes available to anyone. In 2050, garage biology hacking will be well under way. Fear of potential hazards should be met with increased research and education, rather than closing the door on the profound positive impacts that distributed biological technology will have on human health, human impacts on the environment, and increasing standards of living around the world.
Copyright © 2001 Institute
of Electrical and Electronics Engineers. Reprinted from
IEEE
Spectrum. Published on KurzweilAI.net March 3, 2004.
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In 50 years, you may be reading IEEE Spectrum on a leaf. The page
will not actually look like a leaf, but it will be grown like a
leaf. It will be designed for its function, and it will be alive.
The leaf will be the product of intentional biological design and
manufacturing.
Rather than being constantly green, the cells on its surface will
contain pigments controlled by the action of something akin to a
nervous system. Like the skin of a cuttlefish, the cells will turn
color to form words and images as directed by a connection to the
Internet of the day. Given the speed with which the cuttlefish changes
its pigment, these pages may not change fast enough to display moving
images, but they will be fine for the written word. Each page will
be slightly thicker than the paper Spectrum is now printed on, making
room for control elements (the nervous system) and circulation of
nutrients. When a page ages, or is damaged, it will be easily recycled.
It will be fueled by sugar and light.
Many of the artifacts produced in 50 years and used in daily living
will have a similar appearance and a similar origin. The consequences
of mature biological design and manufacturing will be widespread,
and will affect all aspects of the economy, including energy and
resource usage, transportation, and labor. Today, electronic paper
and similar display technologies are just around the corner, but
in the long run they will not be able to compete with the products
of inexpensive, distributed biological manufacturing.
Growing engineered leaves for display devices may seem a complex
biological engineering feat, but foundations for the technology
are already being laid. Structurally simple replacement human tissues
are currently being grown in the laboratory on frameworks of suture
material. Projects to grow functional human heart tissue, and eventually
a whole heart, are under way, with a timeline for completion of
10 years.
Genomic parts list
Within those 10 years, the genomes of many organisms will be sequenced,
providing a parts list for the proteins forming the structural and
control elements in those organisms. Biologists, engineers, and
physicists are already collaborating on models that will help us
understand how those parts work and fit together. The goal for these
models is quantitative prediction of the behavior of biological
systems, which will have profound implications for the understanding
of basic biology and for improving human health.
Beyond initial biomedical consequences, models that can be used
to predict the effects of perturbations to existing biological systems
will become de facto design tools, providing an infrastructure for
creating new technologies based on biology. When we can successfully
predict the behavior of designed biological systems, then an intentional
biology will exist. With an explicit engineering component, intentional
biology is the opposite of the current, very nearly random applications
of biology as technology.
For instance, the present debate over genetically modified foods
is more indicative of the poorly planned use of an immature technology
than a failure of the technology itself. At present we simply can't
predict the effects of tinkering with a system as complex as crops
and their pests. But as with the progression of every other human
technology, from fire, to bridges, to computers, biological engineering
will improve with time. Quantitative models for simple systems like
viral infections of bacteria and yeast signal transduction pathways
are already being tested. Computational methods developed in those
efforts will soon be applied to higher plants and animals. It is
a short step from successful prediction to design and the beginning
of industrial applications.
Yet even before the advent of true biological design, more general
lessons from biology are already transforming our economy. The potential
impact on industrial practices of learning from biology is enormous
and is explored in the book Natural Capitalism, by Paul Hawken and
Amory and L. Hunter Lovins (Little, Brown, London, 1999).
The authors point out that structuring business practices along
biological lines can significantly improve the bottom line. The
human circulatory system, for instance, is optimized to minimize
the work required to pump blood throughout the body. The majority
of industrial pumping systems, however, are optimized to minimize
the cost of the pipes during construction. This means smaller pipes
are used, requiring large pumps that use vastly more energy than
necessary.
Similarly, in the human pumping system, the heart has to work too
hard when arteriosclerosis reduces the diameter of blood vessels.
These vessels then require maintenance in the form of an angioplasty.
Industrial pumping systems are designed with built-in arteriolosclerosis,
and fixing them requires rebuilding from the ground up. Paying careful
attention to several hundred million years of nature's trial-and-error
design experience will save human industry considerable energy and
resources.
A living industrial infrastructure
Borrowing a design aesthetic for industrial function from nature
is just the beginning. The living world will also become part of
our industrial infrastructure. Nature has already discovered how
to fabricate materials and to finesse chemistry in ways that are
the envy of human engineers and chemists. Many companies, both established
and startup, are now focusing on harvesting enzymes from organisms
in the environment for use in industrial processes.
Popular examples of high-strength materials fabricated by biology
at low temperature, pressure, and energy cost are spider silk and
abalone shell. Yet increased resource efficiency and biomaterials
are only the first steps in a revolution in manufacturing. Beyond
using biology as a model for the structure and function of industrial
production, the year 2050 will see humans using biology as the means
of production itself.
Whereas most manufacturing today is highly centralized and materials
are transported long distances throughout the assembly process,
in the year 2050 human industry will use distributed and renewable
manufacturing based upon biology. Renewable manufacturing means
that biology will be used to produce many of the physical things
we use every day.
In early implementation, the organism of choice is likely to be
yeast or a bacterium. The physical infrastructure for this type
of manufacturing is inherently flexible: it is essentially the vats,
pumps, and fluid-handling capacity found in any brewery. Production
runs for different products would involve seeding a vat with a yeast
strain containing the appropriate genetic instructions and then
providing raw materials.
To be sure, there will always be applications and environments
in which biological fabrication is not the best option, and it is
not clear how complex the fabrication task can be, but biology is
capable of fabrication feats impossible for any current or envisioned
human technology to emulate. In some ways, this scheme sounds a
bit like Eric Drexler's nanotechnological assemblers, except that
we already have functional nanotechnology—it's called biology.
The transformation to an economy based on biological manufacturing
will occur as technical manipulations become easier with practice
and through a proliferation of workers with the appropriate skills.
Biological engineering will proceed from profession, to vocation,
to avocation, because the availability of inexpensive, quality DNA
sequencing and synthesis equipment will allow participation by anyone
who wants to learn the details. In 2050, following the fine tradition
of hacking automobiles and computers, garage biology hacking will
be well under way.
Considerable information is already available on how to manipulate
and analyze DNA in the kitchen. A recent Scientific American Amateur
Scientist column provided instructions for amplifying DNA through
the polymerase chain reaction (PCR), and a previous column dealt
with analyzing DNA samples on homemade electrophoresis equipment.
The discussion was immediately picked up in a slashdot.org thread
where participants provided tips for improving the yield of the
PCR process.
More detailed, technical information can be found in any university
biology library in Current Protocols in Molecular Biology, which
contains instructions on how to perform virtually every task needed
in modern molecular biology. This printed compendium has recently
joined the myriad resources maintained on-line by universities and
government agencies, thereby becoming all the more accessible. Open-source
biology is already becoming a reality.
As the "coding" infrastructure for understanding, troubleshooting,
and, ultimately, designing biology develops, DNA sequencers and
synthesizers will become less expensive, faster, and ever simpler
to use. These critical technologies will first move from academic
labs and large biotechnology companies to small businesses, and
eventually to the home garage and kitchen. Many standard laboratory
techniques that once required a doctorate's worth of knowledge and
experience to execute correctly are now used by undergraduates in
a research setting with kits containing color-coded bottles of reagents.
The recipes are easy to follow.
This change in technology represents a democratization of sorts,
and it illustrates the likely changes in labor structure that will
accompany the blossoming of biological technology.
Distributed biological manufacturing
The course of labor in biological technology can be charted by
looking at the experience of the computer and Internet industries.
Many startup companies in Silicon Valley have become contract-engineering
efforts, funded by venture capital, where workers sign on expecting
the company will be sold within a few years, whereupon they will
find a new assignment. The leading edge of the biological technology
revolution could soon look the same. However, unlike today's integrated
circuits, where manufacturing infrastructure costs have now reached
upward of US $1 billion per facility, the infrastructure costs for
renewable biological manufacturing will continue to decline. Life,
and all the evolutionarily developed technology it utilizes, operates
at essentially room temperature, fueled by sugars. Renewable, biological
manufacturing will take place anywhere someone wants to set up a
vat or plant a seed.
Distributed biological manufacturing will be all the more flexible
because the commodity in biotechnology is today becoming information,
rather than things. While it is still often necessary to exchange
samples through the mail, the genomics industry has already begun
to derive income from solely selling information about gene expression,
or which genes are turned on in a particular population of cells.
In a few decades it will be the genomic sequence that is sent between
labs, there to be re-synthesized and expressed as needed. It is
already possible to synthesize sufficient DNA to build a bacterial
genome from scratch in a few weeks using chemical means. Over the
coming decades, that time will be reduced to days, and then to hours,
eventually via the development of directed, template-free, enzymatic
synthesis—a DNA "synthase."
It is possible that the evolution of open-source biology will be
delayed by retrenchment on the part of corporations trying to protect
intellectual property. However, the future model of biology as a
technological instrument of any corporation can be found by simply
looking at the way life currently makes use of biological technology.
Only very rarely is it the case that advantage is conferred on an
organism via a biochemically unique enzyme or pathway.
The toolbox of biochemistry, the parts list—"the kernel,"
to stretch the software analogy—is shared by all organisms
on the planet. In general, organisms differ from one another because
of their order of gene expression or because of relatively subtle
perturbations to protein structures common to all forms of terrestrial
life. That is, innovation in the natural world in some sense has
always followed the idea of a service and flow economy. If the environment
is static, only when an organism figures out how to use the old
toolbox to provide itself, or another organism, with a new service
is advantage conferred.
The analogy to future industrial applications of biology is clear:
When molecular biologists figure out the kernel of biology, innovation
by humans will consist of tweaking the parts to provide new services.
Because of the sheer amount of information, it is unlikely that
a single corporate entity could maintain a monopoly on the kernel.
Eventually, as design tasks increase in number and sophistication,
corporations will have to share techniques and this information
will inevitably spread widely, reaching all levels of technical
ability—the currency of the day will be innovation and design.
As with every other technology developed by humans, biological technology
will be broadly disseminated.
Bypassing conventional infrastructure
As open-source biological manufacturing spreads, it will be adopted
quickly in less developed economies to bypass the first world's
investment in industrial infrastructure. Given the stressed state
of natural resources throughout much of the developing world, it
will not be possible for many of those countries to attain first-world
standards of living with industrial infrastructure as wasteful as
that of the United States. The developing world simply cannot afford
industrial and energy inefficiency.
A short cut is to follow the example of the growing wireless-only
communications infrastructure in Africa and to skip building systems
to transport power and goods. It is already clear that distributed
power generation will soon become more efficient than are centralized
systems. Distributed manufacturing based upon local resources will
save transportation costs, simplify customization, require less
infrastructure investment, and, as a result, will likely cost less
than centralized manufacturing.
Distributed biological manufacturing is the future of the global
economy. With design and fabrication power spread throughout the
world to the extent suggested here, it is necessary to consider
possible dangers. The simple answer is that those dangers are real
and considerable.
This technology enables the creation of new organisms potentially
pathogenic to humans, or to animals and plants upon which we rely.
It is already clear that the social and biological consequences
of extending human life span and human germline engineering will
consume considerable public debate time over the next few decades.
Moreover, the underlying infrastructure and methods are already
so widespread that no one country will be able to manipulate the
development of biological technology by controlling the research
within its borders.
But fear of potential hazards should be met with increased research
and education, rather than closing the door on the profound positive
impacts that distributed biological technology will have on human
health, human impacts on the environment, and increasing standards
of living around the world.
Technology based on intentional, open-source biology is on its
way, whether we like it or not, and the opportunity it represents
will just begin to emerge in the next 50 years.
This essay won a Silver Award in The Economist/Shell
World in 2050 essay competition held last year.
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